PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488151
Common NameARALYDRAFT_488151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 215aa    MW: 24498.9 Da    PI: 9.3737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488151genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-203887255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa a+++a++k++g
  488151 38 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEEAALAYDRAALKFKG 87
            7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-333796IPR001471AP2/ERF domain
SMARTSM003802.6E-3838101IPR001471AP2/ERF domain
PfamPF008472.5E-143887IPR001471AP2/ERF domain
CDDcd000185.48E-343896No hitNo description
SuperFamilySSF541715.43E-233896IPR016177DNA-binding domain
PROSITE profilePS5103224.9743895IPR001471AP2/ERF domain
PRINTSPR003674.0E-123950IPR001471AP2/ERF domain
PRINTSPR003674.0E-126177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVSALSRVIE NPTDPPVKQE LDKSDQLQQD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA  60
ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG PTTTTTIDHA SRGVSESMNS  120
PPIRPGPPSS TTTTTSWPMT YNQDILQYAQ LLTSNNEVDL SYYTSSLFSQ PFSTPSSSSS  180
SSQQSQQQQQ QQQQQQREEE EKSYGYHYYN YPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-283798163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-273798466ATERF1
2gcc_A1e-273798466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608610.0AY560861.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13330) mRNA, complete cds.
GenBankBT0116090.0BT011609.1 Arabidopsis thaliana At5g13330 mRNA, complete cds.
GenBankBT0122500.0BT012250.1 Arabidopsis thaliana At5g13330 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871562.11e-157hypothetical protein ARALYDRAFT_488151
SwissprotQ9LYU31e-104EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLD7M5931e-157D7M593_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__1285__AT5G13330.11e-157(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-71related to AP2 6l